Basic Information
Locus ID:
nbisL1-mrna-481
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 3823038 | 3829506 | - | nbisL1-mrna-481 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.75 | 93,008.25 Da | 53.24 | 66.59 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 769 | 808 | 1.67753E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 767 | 813 | 3.4E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 749 | 814 | 1.65E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 751 | 819 | 4.3E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 769 | 808 | 10.674659 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 375 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 375 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 93 | - | - |
| Coils | Coil | Coil | 339 | 359 | - | - |
| Coils | Coil | Coil | 697 | 724 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_039041419.1 | uncharacterized protein LOC120180060 [Hibiscus syriacus] | 0 |
| A8MQ27 | E3 ubiquitin-protein ligase NEURL1B OS=Homo sapiens OX=9606 GN=NEURL1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3CQA0 | Ring/U-Box superfamily protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00003715pilonHSYRG00117 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology