Basic Information
Locus ID:
nbisL1-mrna-4794
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the cyclin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 11452881 | 11461733 | - | nbisL1-mrna-4794 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 156,227.89 Da | 56.09 | 72.62 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15504 | PHD_PRHA_like | 465 | 517 | 1.47965E-26 | - |
| CDD | cd00043 | CYCLIN | 1270 | 1361 | 5.40863E-13 | IPR013763 |
| CDD | cd00043 | CYCLIN | 1171 | 1260 | 5.7031E-24 | IPR013763 |
| CDD | cd00086 | homeodomain | 805 | 852 | 6.54388E-10 | IPR001356 |
| Pfam | PF00134 | Cyclin, N-terminal domain | 1140 | 1268 | 2.5E-43 | IPR006671 |
| Pfam | PF00628 | PHD-finger | 465 | 520 | 8.7E-11 | IPR019787 |
| Pfam | PF02984 | Cyclin, C-terminal domain | 1270 | 1392 | 3.0E-32 | IPR004367 |
| Pfam | PF00046 | Homeodomain | 808 | 852 | 3.0E-8 | IPR001356 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 804 | 857 | 2.1E-10 | IPR009057 |
| SUPERFAMILY | SSF47954 | Cyclin-like | 1134 | 1267 | 2.5E-46 | IPR036915 |
| SUPERFAMILY | SSF47954 | Cyclin-like | 1270 | 1395 | 9.78E-35 | IPR036915 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 456 | 523 | 2.88E-13 | IPR011011 |
| Gene3D | G3DSA:1.10.472.10 | - | 1155 | 1268 | 1.9E-92 | - |
| Gene3D | G3DSA:1.10.472.10 | - | 1140 | 1389 | 1.9E-92 | - |
| Gene3D | G3DSA:1.10.10.60 | - | 800 | 869 | 1.7E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 459 | 522 | 8.6E-13 | IPR013083 |
| SMART | SM00389 | HOX_1 | 800 | 862 | 9.3E-8 | IPR001356 |
| SMART | SM00385 | cyclin_7 | 1177 | 1261 | 1.3E-26 | IPR013763 |
| SMART | SM00249 | PHD_3 | 465 | 518 | 3.2E-10 | IPR001965 |
| SMART | SM01332 | Cyclin_C_2 | 1270 | 1393 | 1.0E-37 | IPR004367 |
| SMART | SM00385 | cyclin_7 | 1274 | 1362 | 1.4E-16 | IPR013763 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 463 | 520 | 11.047501 | IPR019787 |
| ProSiteProfiles | PS50071 | 'Homeobox' domain profile. | 798 | 858 | 11.563868 | IPR001356 |
| ProSitePatterns | PS00292 | Cyclins signature. | 1172 | 1203 | - | IPR006671 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 466 | 517 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 681 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 858 | 877 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 574 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1061 | 1124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 919 | 948 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 858 | 884 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 634 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1014 | 1048 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1061 | 1086 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 712 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1019 | 1048 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 589 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19510.1 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain. Encodes a member of the PHD-finger homeodomain protein family. The HAT3.1 homeodomain is highly divergent in sequence even at positions that are almost invariable among homeodomains. HAT3.1 shows a preference for the sequence T(A/G)(A/C)ACCA, different from those bound by other homeodomains. | 0 |
| RefSeq | XP_021646965.1 | homeobox protein HAT3.1-like isoform X1 [Hevea brasiliensis] | 0 |
| P48786 | Pathogenesis-related homeodomain protein OS=Petroselinum crispum OX=4043 GN=PRH PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LDI6 | Uncharacterized protein MANES_07G066300 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1136, jg15233 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_26514, gene_2937 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000467, Ah019240 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g054330, BVRB_5g118590 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg30667, Sbi_jg38063, Sbi_jg58607, Sbi_jg6193 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15648, Seu_jg28469 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00006237, GOSA_00014842 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl00692, Sgl05708, Sgl55094, Sgl83349 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000004329, gene:ENSEOMG00000020670 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.3AG0000420, CQ.Regalona.r1.3BG0000340 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30104070, pistato.v30262780 |
| Apiaceae | Apium graveolens | 3 | Ag10G02722, Ag1G00855, Ag6G02642 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G019350, COCNU_06G017180, COCNU_11G013320 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103700823, gene-LOC103713091, gene-LOC103722616 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.627.V1.1, AsparagusV1_03.2139.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G12011, Ftri14G23825, Ftri7G10563 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G19510.1, AT3G19530.1, AT4G29940.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022305m.g.v1.0, Thhalv10024489m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g17570.v2.2, Sp7g27750.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g044670.2N, BniB03g011150.2N, BniB05g007710.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G2006, Ceq09G0316 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G2193, Cgl09G0350 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g03990, gene.Cymno18g00850 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.2002s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g11050 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-12, nbisL1-mrna-5669 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG07.529, evm.TU.LG08.559 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00007718, Pov_00012209, Pov_00039460 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G13563 |
| Poaceae | Echinochloa crus-galli | 9 | AH02.3171, AH05.1708, AH07.365, BH02.3716, BH05.1860 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0101530, gene-QOZ80_2BG0154910 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0077220.1, HORVU.MOREX.r3.3HG0288670.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020373, gene-QYE76_055280 |
| Poaceae | Oryza coarctata | 5 | Oco03G002410, Oco04G002330, Oco09G014400, Oco11G005900 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os02g05450.1, LOC_Os06g12400.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G486900, gene-BS78_04G036900 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0202763, Pt_Chr0504143, Pt_Chr0504147, Pt_Chr0602209 |
| Poaceae | Sporobolus alterniflorus | 12 | Chr01G016960, Chr02G009830, Chr03G016020, Chr05G023640 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G563400, Tel3E01G002400, Tel3E01G450300 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG050040, gene_TRIDC1BG056900 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G338900.2, TraesCS1B02G351300.2 ... |
| Poaceae | Zea mays | 8 | Zm00001eb153100_P001, Zm00001eb232240_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25131, nbis-gene-33741 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11128, Zma_g12189, Zma_g28601 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.1437, evm.TU.LG09.483, evm.TU.LG11.1313 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g20500, gene.Posoc07g13040 |
| Rhizophoraceae | Bruguiera sexangula | 5 | evm.TU.Scaffold_10_RagTag.1141, evm.TU.Scaffold_2_RagTag.382 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-25468, nbisL1-mrna-4816, nbisL1-mrna-5858 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-10234, nbisL1-mrna-14267, nbisL1-mrna-3692 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-16711, nbisL1-mrna-3482, nbisL1-mrna-4807 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000008l.1188, evm.TU.utg000009l.733 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00001403, Maker00005599, Maker00015145, Maker00016288 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-14259, nbisL1-mrna-16571, nbisL1-mrna-2532 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-13992, nbisL1-mrna-14678, nbisL1-mrna-20965 ... |
| Salicaceae | Populus euphratica | 5 | populus_peu01564, populus_peu05834, populus_peu11201 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598971, gene-LOC132603227 |
| Solanaceae | Solanum chilense | 2 | SOLCI004606800, SOLCI006657500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008023, gene-LOC107024377 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.14104_chr08_-, STRG.11538_chr02_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0373, TC12G0432 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23900.v3.1 |