Basic Information
Locus ID:
nbisL1-mrna-4794
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 20292889 | 20298137 | + | nbisL1-mrna-4794 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.83 | 69,077.48 Da | 40.20 | 95.30 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 210 | 464 | 1.8E-88 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 117 | 2.83E-12 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 18 | 119 | 1.1E-7 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 210 | 488 | 85.592651 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 595 | 611 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 623 | - | - |
| Coils | Coil | Coil | 528 | 548 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_011030353.1 | PREDICTED: BTB/POZ domain-containing protein NPY2-like [Populus euphratica] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2KIS1 | NPH3 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS283891 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology