Basic Information
Locus ID:
nbisL1-mrna-4778
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 4388058 | 4392103 | - | nbisL1-mrna-4778 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.24 | 54,215.11 Da | 47.06 | 82.80 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12515 | Ca2+-ATPase N terminal autoinhibitory domain | 37 | 79 | 4.8E-16 | IPR024750 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 128 | 396 | 1.4E-45 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 109 | 397 | 2.83E-75 | IPR011009 |
| Gene3D | G3DSA:1.20.5.170 | - | 47 | 101 | 1.3E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 199 | 422 | 1.4E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 102 | 198 | 2.2E-27 | - |
| SMART | SM00220 | serkin_6 | 125 | 380 | 3.3E-36 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 125 | 400 | 39.22681 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 246 | 258 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 131 | 153 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_034894497.1 | receptor-like kinase TMK4 isoform X2 [Populus alba] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7XYL6 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_056555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology