Basic Information
Locus ID:
nbisL1-mrna-4777
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 4382717 | 4386240 | - | nbisL1-mrna-4777 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 79,945.00 Da | 39.81 | 91.33 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 317 | 355 | 0.0035 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 360 | 418 | 2.2E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 107 | 144 | 2.2E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 19 | 56 | 1.7E-5 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 580 | 700 | 4.82E-12 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 516 | 573 | 1.85E-9 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 319 | 428 | 1.81E-18 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 33 | 297 | 3.15E-45 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 317 | 442 | 2.0E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 18 | 313 | 7.0E-74 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 518 | 579 | 4.4E-12 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 580 | 685 | 8.8E-12 | - |
| SMART | SM00369 | LRR_typ_2 | 129 | 154 | 77.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 82 | 104 | 47.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 381 | 404 | 22.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 105 | 128 | 0.018 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 405 | 429 | 49.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 178 | 202 | 27.0 | IPR003591 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 548 | 570 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 489 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_002324686.4 | receptor-like kinase TMK4 [Populus trichocarpa] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YMX3 | Protein kinase domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_013198 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology