halophFGD

Basic Information

Locus ID: nbisL1-mrna-4712

Species & Taxonomic ID: Ceriops zippeliana & 413951

Genome Assembly: GCA_037897445.1

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
000139F_pilon	3943936	3949274	-	nbisL1-mrna-4712

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.79	68,419.34 Da	38.28	85.87	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13812	Pentatricopeptide repeat domain	110	170	1.7E-15	IPR002885
Pfam	PF13041	PPR repeat family	266	309	1.4E-8	IPR002885
Pfam	PF13041	PPR repeat family	402	448	2.3E-11	IPR002885
Pfam	PF13041	PPR repeat family	192	240	2.8E-12	IPR002885
Pfam	PF13041	PPR repeat family	332	380	6.1E-11	IPR002885
Pfam	PF13812	Pentatricopeptide repeat domain	57	98	0.001	IPR002885
SUPERFAMILY	SSF81901	HCP-like	65	300	9.94E-7	-
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	324	512	5.4E-44	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	43	185	1.4E-33	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	186	323	3.4E-36	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	230	264	1.3E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	89	123	4.4E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	125	157	4.3E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	159	193	4.4E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	196	227	1.0E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	58	87	9.2E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	405	438	2.0E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	335	369	3.1E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	371	404	8.0E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	266	298	3.8E-7	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	228	262	10.468099	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	87	121	9.470621	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	368	402	10.215989	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	193	227	12.287675	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	122	156	13.712644	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	333	367	11.750571	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	298	332	8.780059	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	403	437	11.662881	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	438	472	9.646002	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	157	192	11.202506	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	263	297	10.785976	IPR002885

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K17710 (pentatricopeptide repeat domain-containing protein 1)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G21222.1	protein kinase family protein.
RefSeq	XP_034699850.1	pentatricopeptide repeat-containing protein At5g25630-like isoform X2 [Vitis riparia]
Swiss-Prot	Q8S9D1	Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana OX=3702 GN=ATC401 PE=2 SV=1
TrEMBL	A0A2P2J6C0	Uncharacterized protein MANES_03G021600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg3824, jg7860
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10714, gene_8166
Amaranthaceae	Atriplex hortensis	2	Ah014544, Ah034904
Amaranthaceae	Beta vulgaris	4	BVRB_2g031840, BVRB_8g196490, BVRB_8g196500, BVRB_8g196530
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg21000, Sbi_jg22782, Sbi_jg24975, Sbi_jg8835
Amaranthaceae	Salicornia europaea	2	Seu_jg16657, Seu_jg19774
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00007807
Amaranthaceae	Suaeda glauca	5	Sgl42210, Sgl46980, Sgl54062, Sgl62458, Sgl67003
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000010687, gene:ENSEOMG00000018396 ... gene:ENSEOMG00000019210, gene:ENSEOMG00000032878, gene:ENSEOMG00000047297, gene:ENSEOMG00000050856
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0016360, CQ.Regalona.r1.2BG0018130 ... CQ.Regalona.r1.8AG0020160, CQ.Regalona.r1.8BG0022280
Anacardiaceae	Pistacia vera	2	pistato.v30253400, pistato.v30256590
Apiaceae	Apium graveolens	2	Ag10G01538, Ag7G00293
Arecaceae	Cocos nucifera	1	COCNU_03G012070
Arecaceae	Phoenix dactylifera	1	gene-LOC103710907
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1546.V1.1, AsparagusV1_07.2392.V1.1 ... AsparagusV1_07.417.V1.1
Asteraceae	Flaveria trinervia	1	Ftri3G24253
Brassicaceae	Arabidopsis thaliana	2	AT5G21222.1, AT5G25630.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10003915m.g.v1.0, Thhalv10012659m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g21900.v2.2, Sp6g23340.v2.2
Brassicaceae	Brassica nigra	3	BniB02g041700.2N, BniB07g025020.2N, BniB07g039680.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G2119, Ceq06G1498
Casuarinaceae	Casuarina glauca	3	Cgl04G2313, Cgl04G2324, Cgl06G1553
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g12490, gene.Cymno02g13330, gene.Cymno12g02340
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g15860
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG07.1088, evm.TU.LG07.775
Plantaginaceae	Plantago ovata	1	Pov_00003850
Plumbaginaceae	Limonium bicolor	2	Lb7G34995, Lb7G35002
Poaceae	Echinochloa crus-galli	3	AH06.2290, BH07.3959, CH06.2313
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0521710, gene-QOZ80_6BG0474830
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0248630.1
Poaceae	Lolium multiflorum	2	gene-QYE76_051474, gene-QYE76_051482
Poaceae	Oryza coarctata	2	Oco01G005680, Oco02G005770
Poaceae	Paspalum vaginatum	1	gene-BS78_10G191200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0204886, Pt_Chr0205057
Poaceae	Sporobolus alterniflorus	3	Chr07G014820, Chr21G007420, Chr31G007880
Poaceae	Thinopyrum elongatum	1	Tel3E01G276300
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG020600, gene_TRIDC3BG030970
Poaceae	Triticum aestivum	3	TraesCS3A02G153300.1, TraesCS3B02G179900.1 ... TraesCS3D02G160600.2
Poaceae	Zea mays	1	Zm00001eb315460_P002
Poaceae	Zoysia macrostachya	1	Zma_g29714
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2875, evm.TU.LG05.2345, evm.TU.LG07.1110 ... evm.TU.LG23.1077
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g13310, gene.Posoc09g07670
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60417.2, evm.TU.60418.2 ... evm.TU.Scaffold_4_RagTag.1207
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-25631
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14993
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-4712
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000008l.1113
Rhizophoraceae	Kandelia obovata	1	Maker00001456
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14184, nbisL1-mrna-9731
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-21067, nbisL1-mrna-996
Salicaceae	Populus euphratica	4	populus_peu04868, populus_peu12782, populus_peu21928 ... populus_peu38110
Solanaceae	Lycium barbarum	2	gene-LOC132603462, gene-LOC132635663
Solanaceae	Solanum chilense	2	SOLCI000411300, SOLCI005497300
Solanaceae	Solanum pennellii	2	gene-LOC107026118, gene-LOC107028521
Tamaricaceae	Reaumuria soongarica	2	STRG.32841_chr09_-, STRG.3917_chr02_+
Tamaricaceae	Tamarix chinensis	2	TC02G0334, TC12G1292
Zosteraceae	Zostera marina	1	Zosma05g13580.v3.1