Basic Information
Locus ID:
nbisL1-mrna-4703
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
proteinaceous RNase P 1, chloroplastic mitochondrial-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 3896268 | 3900673 | - | nbisL1-mrna-4703 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 93,461.82 Da | 39.48 | 76.35 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 149 | 209 | 5.9E-16 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 524 | 747 | 9.1E-71 | IPR031595 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 334 | 481 | 1.2E-53 | IPR033443 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 158 | 207 | 6.8E-11 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 333 | 750 | 3.2E-186 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11980 | - | 540 | 714 | 3.2E-186 | - |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 397 | 428 | 0.0033 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 394 | 428 | 9.898111 | IPR002885 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_021641394.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial-like isoform X1 [Hevea brasiliensis] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9W5C1 | ribonuclease P OS=Manihot esculenta OX=3983 GN=MANES_03G022700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology