Basic Information
Locus ID:
nbisL1-mrna-4669
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 19241264 | 19244252 | - | nbisL1-mrna-4669 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 68,381.96 Da | 52.03 | 91.74 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 204 | 462 | 7.5E-90 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 36 | 120 | 3.5E-7 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 17 | 120 | 2.35E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 13 | 127 | 5.6E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 35 | 127 | 7.0E-4 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 204 | 486 | 86.764206 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 35 | 103 | 10.633594 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 577 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 590 | 604 | - | - |
| Coils | Coil | Coil | 519 | 546 | - | - |
| Coils | Coil | Coil | 353 | 373 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08570.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_012091015.1 | BTB/POZ domain-containing protein At3g08570 [Jatropha curcas] | 0 |
| Q9C9Z7 | BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana OX=3702 GN=At3g08570 PE=2 SV=2 | 0 | |
| TrEMBL | A0A067JPB0 | BTB/POZ domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_00632 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16814, jg3141, jg36128 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14603, gene_6475 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah028262, Ah031576 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g156670, BVRB_7g167550 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg2113, Sbi_jg26541, Sbi_jg34026, Sbi_jg34397 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15068, Seu_jg2654 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005841, GOSA_00011926 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73827, Sgl77329 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000007368, gene:ENSEOMG00000007614 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0010380, CQ.Regalona.r1.7AG0023310 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30014530, pistato.v30269460 |
| Apiaceae | Apium graveolens | 3 | Ag10G00758, Ag10G01000, Ag9G02882 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G007760, COCNU_12G006100 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696661, gene-LOC103705965, gene-LOC103716687 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1754.V1.1, AsparagusV1_02.897.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G07468, Ftri15G10167, Ftri3G28858 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G08570.1, AT3G08660.1, AT5G48800.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003813m.g.v1.0, Thhalv10020370m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g26430.v2.2, Sp2g19200.v2.2, Sp3g07100.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g055880.2N, BniB02g069840.2N, BniB04g046070.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G1999, Ceq08G0865 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G2107, Cgl08G0883 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g12840 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g22900, gene.Thate06g06410 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-11945, nbisL1-mrna-11946, nbisL1-mrna-9753 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.838, evm.TU.LG04.1555 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006986, Pov_00011570 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G09506, Lb2G09511, Lb4G23994 |
| Poaceae | Echinochloa crus-galli | 8 | AH04.94, AH05.22, BH04.102, BH05.47, CH04.112, CH04.947 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0672680, gene-QOZ80_9BG0696290 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0464130.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_003588, gene-QYE76_008143, gene-QYE76_008144 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G016900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702905 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G021050, Chr06G022660, Chr31G006670 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G256300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG024500, gene_TRIDC5BG025700 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G146300.1, TraesCS5B02G145100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb405800_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42510 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5010 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1023, evm.TU.LG07.210, evm.TU.LG12.709 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g27250, gene.Posoc05g02180 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.522, evm.TU.Scaffold_5_RagTag.1206 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11675, nbisL1-mrna-4669 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2074, nbisL1-mrna-9077 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11243, nbisL1-mrna-9661 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.701, evm.TU.utg000009l.645 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005358, Maker00014139 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2616, nbisL1-mrna-9842 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16604, nbisL1-mrna-19904 |
| Salicaceae | Populus euphratica | 2 | populus_peu25233, populus_peu30914 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132605688, gene-LOC132610939, gene-LOC132631211 |
| Solanaceae | Solanum chilense | 3 | SOLCI000237700, SOLCI000433200, SOLCI004588400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107023716, gene-LOC107029677, gene-LOC107029734 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_7168, gene_7453 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0631, TC07G0950 |