Basic Information
Locus ID:
nbisL1-mrna-4659
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 10314755 | 10319531 | - | nbisL1-mrna-4659 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 98,811.29 Da | 47.35 | 101.47 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 128 | 150 | 1.8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 271 | 332 | 2.3E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 152 | 209 | 2.2E-9 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 526 | 798 | 5.6E-18 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 495 | 800 | 6.74E-40 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 68 | 420 | 3.06E-48 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 596 | 823 | 8.5E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 196 | 408 | 1.2E-41 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 195 | 2.2E-32 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 497 | 595 | 3.4E-18 | - |
| SMART | SM00369 | LRR_typ_2 | 198 | 221 | 290.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 150 | 171 | 14.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 198 | 230 | 260.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 174 | 195 | 190.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 246 | 272 | 67.0 | - |
| SMART | SM00369 | LRR_typ_2 | 174 | 197 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 126 | 149 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 150 | 173 | 19.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 319 | 342 | 11.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 270 | 294 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 246 | 269 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 222 | 245 | 32.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 176 | 198 | 7.1036 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 520 | 805 | 20.174177 | IPR000719 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 177 | 190 | 9.5E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 246 | 259 | 9.5E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 904 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 852 | 904 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 852 | 876 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16250.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_002509489.2 | probable LRR receptor-like serine/threonine-protein kinase At2g16250 [Ricinus communis] | 0 |
| C0LGK4 | Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana OX=3702 GN=At2g16250 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KGG5 | Uncharacterized protein MANES_15G163300 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg11876, jg22876, jg28763, jg30301, jg993 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21655 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010238 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217460 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12444, Sbi_jg45873 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20231 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022447 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56078, Sgl61411, Sgl61646 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015508, gene:ENSEOMG00000037295 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0007660, CQ.Regalona.r1.9AG0016850 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30046490, pistato.v30114320, pistato.v30290660 |
| Apiaceae | Apium graveolens | 7 | Ag11G03129, Ag11G03888, Ag11G04031, Ag1G00930, Ag6G02579 ... |
| Arecaceae | Cocos nucifera | 4 | COCNU_05G001130, COCNU_06G019210, COCNU_13G004990 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103704246, gene-LOC103705357, gene-LOC103705703 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2369.V1.1, AsparagusV1_03.708.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G18332, Ftri18G15725, Ftri1G05675 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G16250.1, AT4G39270.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10023130m.g.v1.0, Thhalv10024435m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g29440.v2.2, Sp7g02900.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g012560.2N, BniB02g089280.2N, BniB03g063530.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq09G0108, Ceq09G0115 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0125 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno11g03770, gene.Cymno14g06560 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g28400, gene.Thate06g14220 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.578, evm.TU.LG08.139 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007518, Pov_00007519 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13472, Lb3G17252 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.769, BH01.913, CH01.930 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0218260, gene-QOZ80_3BG0263500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0338720.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062259 |
| Poaceae | Oryza coarctata | 2 | Oco05G022190, Oco06G023070 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g51440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G098600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107508, Pt_Chr0206794 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G006550, Chr04G027540, Chr07G026460, Chr12G030910 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G095300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG040530, gene_TRIDC4BG008650 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G259100.1, TraesCS4B02G055600.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb055750_P001, Zm00001eb215790_P003 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-14904 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g591 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.370, evm.TU.LG08.1849, evm.TU.LG09.1610 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc03g26650, gene.Posoc04g07480, gene.Posoc06g18550 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_1_RagTag.2269, evm.TU.Scaffold_1_RagTag.2270 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4994, nbisL1-mrna-9018 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-13900, nbisL1-mrna-14087, nbisL1-mrna-18738 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-15440, nbisL1-mrna-3288, nbisL1-mrna-9910 |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000002l.566, evm.TU.utg000009l.828 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00003388, Maker00006115, Maker00011962, Maker00017023 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-14752, nbisL1-mrna-19087, nbisL1-mrna-3017 ... |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-1253, nbisL1-mrna-20271, nbisL1-mrna-22411 |
| Salicaceae | Populus euphratica | 4 | populus_peu08872, populus_peu30735, populus_peu35439 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132599173, gene-LOC132604135, gene-LOC132606566 |
| Solanaceae | Solanum chilense | 2 | SOLCI000663400, SOLCI007323300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007220, gene-LOC107008177 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.18269_chr09_-, gene_7830 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0470, TC12G1038 |
| Zosteraceae | Zostera marina | 3 | Zosma03g02650.v3.1, Zosma03g29270.v3.1, Zosma06g02710.v3.1 |