Basic Information
Locus ID:
nbisL1-mrna-4657
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 62575246 | 62578851 | + | nbisL1-mrna-4657 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.56 | 39,602.57 Da | 44.72 | 76.42 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 4.32656E-29 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 324 | 366 | 1.0006E-23 | - |
| Pfam | PF00627 | UBA/TS-N domain | 149 | 186 | 2.1E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 328 | 363 | 1.6E-11 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.2E-15 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 247 | 302 | 4.9E-23 | IPR015360 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 87 | 1.15E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 307 | 369 | 7.53E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 243 | 310 | 1.96E-23 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 145 | 196 | 2.66E-12 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 141 | 191 | 3.3E-21 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 237 | 302 | 1.4E-28 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 5.9E-25 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 319 | 367 | 3.9E-24 | - |
| SMART | SM00727 | CBM | 243 | 288 | 1.8E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 328 | 365 | 1.7E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.8E-21 | IPR000626 |
| SMART | SM00165 | uba_6 | 148 | 188 | 3.9E-5 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 371 | 9.6E-131 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 147 | 189 | 12.884254 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.673283 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 326 | 366 | 15.462643 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 322 | 338 | 7.8E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 273 | 295 | 7.8E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 354 | 369 | 7.8E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 339 | 353 | 7.8E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 127 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_039041173.1 | ubiquitin receptor RAD23b-like isoform X1 [Hibiscus syriacus] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A6P5WHI1 | Ubiquitin receptor RAD23 OS=Durio zibethinus OX=66656 GN=LOC111274768 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology