Basic Information
Locus ID:
nbisL1-mrna-4650
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
strubbelig-receptor family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 62512482 | 62518269 | - | nbisL1-mrna-4650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 78,290.56 Da | 41.81 | 85.06 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 420 | 690 | 2.45924E-85 | - |
| Pfam | PF13855 | Leucine rich repeat | 99 | 156 | 7.9E-9 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 416 | 687 | 2.4E-38 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 72 | 3.2E-8 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 169 | 191 | 0.17 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 395 | 687 | 2.14E-68 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 41 | 234 | 2.96E-41 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 182 | 8.0E-39 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 183 | 248 | 7.2E-12 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 493 | 710 | 2.7E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 376 | 491 | 5.7E-26 | - |
| SMART | SM00369 | LRR_typ_2 | 97 | 125 | 5.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 167 | 190 | 4.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 143 | 166 | 6.5 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 414 | 690 | 34.49192 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 420 | 443 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 100 | 113 | 1.1E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 167 | 180 | 1.1E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 697 | 721 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 697 | 712 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 285 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_039041131.1 | protein STRUBBELIG-RECEPTOR FAMILY 6-like isoform X1 [Hibiscus syriacus] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2Y492 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112443pilonHSYRG00223 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology