Basic Information
Locus ID:
nbisL1-mrna-4645
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 62497554 | 62497913 | - | nbisL1-mrna-4645 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 13,157.28 Da | 35.41 | 98.23 | 0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 34 | 75 | 1.1E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 30 | 80 | 6.36E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 19 | 83 | 7.9E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 34 | 74 | 1.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 34 | 75 | 12.017182 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12760.2 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_039009238.1 | E3 ubiquitin-protein ligase RHA2A-like [Hibiscus syriacus] | 0 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D2J202 | RING-type E3 ubiquitin transferase OS=Gossypium tomentosum OX=34277 GN=ES332_D10G057700v1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4645 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.4054, CH01.4319 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0247630, gene-QOZ80_7AG0581660 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0112830.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_018681, gene-QYE76_038791, gene-QYE76_068013 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g02260.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr12G019650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G235300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G109000.1.cds1, TraesCS2B02G126700.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb016280_P001, Zm00001eb111410_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-103, nbis-gene-1626 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1237, Zma_g7070 |