Basic Information
Locus ID:
nbisL1-mrna-4644
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 62493538 | 62494386 | - | nbisL1-mrna-4644 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 31,003.99 Da | 53.64 | 79.54 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 104 | 147 | 1.57184E-20 | - |
| Pfam | PF13639 | Ring finger domain | 104 | 147 | 1.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 85 | 151 | 2.3E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 151 | 1.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 105 | 146 | 3.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 105 | 147 | 12.046688 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 282 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039064995.1 | RING-H2 finger protein ATL3-like [Hibiscus syriacus] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A3BTK4 | RING-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00109923pilonHSYRG00027 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology