Basic Information
Locus ID:
nbisL1-mrna-4636
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 3445673 | 3447079 | + | nbisL1-mrna-4636 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 52,984.86 Da | 49.22 | 70.32 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 260 | 283 | 0.95 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 188 | 217 | 2.5E-4 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 362 | 458 | 7.1E-32 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 159 | 185 | 0.0015 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 159 | 329 | 3.4E-30 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 188 | 221 | 1.6E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 159 | 186 | 1.0E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 185 | 219 | 11.279235 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 154 | 184 | 9.262356 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 79 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021672854.1 | pentatricopeptide repeat-containing protein At2g15690-like [Hevea brasiliensis] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2Q3K9 | Uncharacterized protein MANES_16G103500 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology