Basic Information
Locus ID:
nbisL1-mrna-4623
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 10062431 | 10071726 | - | nbisL1-mrna-4623 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 209,039.73 Da | 48.75 | 84.07 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1474 | 1887 | 1.5251E-118 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1522 | 1892 | 7.2E-78 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1467 | 1885 | 1.57E-92 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 187 | 652 | 2.34E-40 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1764 | 1890 | 2.8E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 177 | 482 | 4.2E-52 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1413 | 1655 | 1.7E-42 | - |
| SMART | SM00119 | hect_3 | 1485 | 1892 | 1.3E-79 | IPR000569 |
| SMART | SM00185 | arm_5 | 344 | 382 | 8.7 | IPR000225 |
| SMART | SM00185 | arm_5 | 218 | 259 | 110.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 261 | 302 | 52.0 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1498 | 1892 | 53.855232 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 970 | 1037 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 678 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1058 | 1073 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1137 | 1171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1139 | 1171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 970 | 1087 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 135 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_021659090.1 | E3 ubiquitin-protein ligase UPL3-like [Hevea brasiliensis] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067K0H3 | HECT-type E3 ubiquitin transferase OS=Jatropha curcas OX=180498 GN=JCGZ_18809 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology