Basic Information
Locus ID:
nbisL1-mrna-4615
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Regulatory protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 3304741 | 3309972 | + | nbisL1-mrna-4615 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 50,898.68 Da | 39.51 | 93.64 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12313 | NPR1/NIM1 like defence protein C terminal | 223 | 431 | 2.3E-69 | IPR021094 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 151 | 195 | 4.8E-5 | - |
| Pfam | PF11900 | Domain of unknown function (DUF3420) | 81 | 124 | 1.1E-7 | IPR024228 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 114 | 223 | 4.2E-17 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 61 | 241 | 2.2E-18 | IPR036770 |
| SMART | SM00248 | ANK_2a | 118 | 146 | 1800.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 147 | 177 | 1.2 | IPR002110 |
| SMART | SM00248 | ANK_2a | 181 | 210 | 0.84 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 450 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64280.1 | regulatory protein (NPR1). This gene is a key regulator of the salicylic acid (SA)-mediated systemic acquired resistance (SAR) pathway. It is similar to the transcription factor inhibitor I kappa B, and contains ankyrin repeats. It confers resistance to the pathogens Pseudomonas syringae and Peronospora parasitica in a dosage-dependent fashion. Although transgenic Arabidopsis plants overexpressing NPR1 acquire enhanced sensitivity to SA and (benzothiadiazole) BTH, they display no obvious detrimental morphological changes and do not have elevated pathogenesis-related gene expression until activated by inducers or pathogens. | 0 |
| RefSeq | XP_021597891.1 | BTB/POZ domain and ankyrin repeat-containing protein NPR1 isoform X1 [Manihot esculenta] | 0 |
| Q5D0W8 | BTB/POZ domain and ankyrin repeat-containing protein NPR1 OS=Oryza sativa subsp. indica OX=39946 GN=NPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9UAL7 | BTB domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_16G100600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg20876, jg24099, jg32913, jg37460 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9359 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015177 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24590, Sbi_jg8451 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28716 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014746 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41783, Sgl46585 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011052, gene:ENSEOMG00000034168 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0014830, CQ.Regalona.r1.8BG0016030 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30013180, pistato.v30078240, pistato.v30108090 ... |
| Apiaceae | Apium graveolens | 4 | Ag10G01441, Ag6G01202, Ag7G01075, Ag9G02479 |
| Arecaceae | Cocos nucifera | 5 | COCNU_02G001470, COCNU_03G015070, COCNU_06G018980 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103702021, gene-LOC103705401, gene-LOC103719294 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2375.V1.1, AsparagusV1_07.3159.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G10356, Ftri18G17771, Ftri1G03889, Ftri8G26191 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G64280.1, AT4G19660.1, AT4G26120.1, AT5G45110.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000824m.g.v1.0, Thhalv10023365m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g00470.v2.2, Sp2g09920.v2.2, Sp7g18230.v2.2 ... |
| Brassicaceae | Brassica nigra | 7 | BniB02g062170.2N, BniB03g012550.2N, BniB04g012090.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq02G1445, Ceq02G2177, Ceq06G0842 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G1490, Cgl02G2254, Cgl06G0867 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g11640, gene.Cymno06g03730, gene.Cymno13g03260 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate02g24240, gene.Thate02g24260, gene.Thate04g03600 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4692, nbisL1-mrna-5499 |
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG04.2266, evm.TU.LG07.1255, evm.TU.LG12.195 ... |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002953, Pov_00031763, Pov_00038621 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14534 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.1393, AH02.314, AH02.3395, BH01.1258, BH02.342 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_1AG0013110, gene-QOZ80_1AG0034640 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0236240.1, HORVU.MOREX.r3.3HG0291620.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_050132, gene-QYE76_055455, gene-QYE76_063196 |
| Poaceae | Oryza coarctata | 6 | Oco01G004120, Oco01G021250, Oco02G004140, Oco02G021840 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g09800.1, LOC_Os01g56200.1, LOC_Os03g46440.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G132500, gene-BS78_03G030700 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0205292, Pt_Chr0602092, Pt_Chr0602113, Pt_Chr0602542 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr01G008640, Chr02G008560, Chr02G021010, Chr03G006430 ... |
| Poaceae | Thinopyrum elongatum | 7 | Tel1E01G515200, Tel3E01G183200, Tel3E01G183400 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG012960, gene_TRIDC3AG044830 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G105400.1, TraesCS3A02G298800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb065420_P002, Zm00001eb121040_P001 ... |
| Poaceae | Zoysia japonica | 7 | nbis-gene-11812, nbis-gene-13337, nbis-gene-20590 ... |
| Poaceae | Zoysia macrostachya | 6 | Zma_g11226, Zma_g3112, Zma_g7805, Zma_g792, Zma_g794 ... |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1529, evm.TU.LG07.1191 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g21400, gene.Posoc10g09380 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.1823, evm.TU.Scaffold_4_RagTag.1825 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25755 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4245 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4615 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1031 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000920 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14853, nbisL1-mrna-14854 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1122, nbisL1-mrna-1123 |
| Salicaceae | Populus euphratica | 5 | populus_peu11921, populus_peu15006, populus_peu29049 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132616465, gene-LOC132620290, gene-LOC132621418 |
| Solanaceae | Solanum chilense | 1 | SOLCI001298000 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107011476, gene-LOC107026249, gene-LOC107026404 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6528 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1776 |
| Zosteraceae | Zostera marina | 2 | Zosma03g24130.v3.1, Zosma06g12380.v3.1 |