Basic Information
Locus ID:
nbisL1-mrna-4611
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 3270666 | 3274120 | + | nbisL1-mrna-4611 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 31,534.04 Da | 43.83 | 101.98 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 113 | 230 | 2.25072E-42 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 9 | 86 | 1.9E-18 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 126 | 234 | 4.7E-29 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 8 | 254 | 1.85E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 109 | 273 | 9.8E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 108 | 1.1E-31 | IPR027417 |
| SMART | SM00490 | helicmild6 | 153 | 234 | 3.0E-31 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 101 | 17.909353 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 112 | 273 | 25.750874 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 47 | 55 | - | IPR000629 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.3 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_008337727.1 | eukaryotic initiation factor 4A-11 [Malus domestica] | 0 |
| P41379 | Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2L5F9 | Eukaryotic initiation factor 4A-14-like OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology