Basic Information
Locus ID:
nbisL1-mrna-4605
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 62190983 | 62196143 | - | nbisL1-mrna-4605 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 48,193.42 Da | 52.30 | 83.05 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 266 | 356 | 8.91201E-29 | - |
| CDD | cd12352 | RRM1_TIA1_like | 54 | 124 | 1.08191E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 292 | 340 | 5.5E-5 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 54 | 120 | 3.1E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 254 | 360 | 4.62E-14 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 50 | 169 | 4.17E-24 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 243 | 361 | 7.1E-18 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 46 | 131 | 1.6E-19 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 132 | 239 | 4.8E-5 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 267 | 352 | 5.8E-8 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 53 | 122 | 3.7E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 266 | 356 | 12.594446 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 52 | 126 | 15.016313 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 262 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_038995077.1 | oligouridylate-binding protein 1B-like [Hibiscus syriacus] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3B0W0 | Oligouridylate-binding protein 1A OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110332pilonHSYRG00042 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology