Basic Information
Locus ID:
nbisL1-mrna-4599
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 9905288 | 9910896 | - | nbisL1-mrna-4599 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 55,917.81 Da | 41.21 | 112.32 | 0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 89 | 502 | 2.12263E-56 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 89 | 462 | 2.7E-29 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 88 | 496 | 1.44E-38 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 86 | 500 | 4.3E-41 | IPR036259 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_011046630.1 | PREDICTED: hippocampus abundant transcript-like protein 1 [Populus euphratica] | 0 |
| P02982 | Tetracycline resistance protein, class A OS=Escherichia coli OX=562 GN=tetA PE=3 SV=2 | 0 | |
| TrEMBL | A0A2P2LF70 | Hippocampus abundant transcript-like protein 1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology