Basic Information
Locus ID:
nbisL1-mrna-4598
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 62154309 | 62156906 | - | nbisL1-mrna-4598 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 57,675.95 Da | 47.75 | 98.99 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 136 | 334 | 4.61912E-135 | - |
| CDD | cd18787 | SF2_C_DEAD | 345 | 475 | 1.04535E-60 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 358 | 466 | 9.7E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 157 | 318 | 1.9E-39 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 201 | 486 | 2.87E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 122 | 340 | 1.9E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 341 | 505 | 6.5E-58 | IPR027417 |
| SMART | SM00490 | helicmild6 | 385 | 466 | 1.5E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 151 | 348 | 4.2E-56 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 344 | 505 | 25.880337 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 132 | 160 | 10.40907 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 163 | 333 | 29.031763 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 279 | 287 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_039041112.1 | eukaryotic initiation factor 4A-14 [Hibiscus syriacus] | 0 |
| P41379 | Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J9MLY6 | Eukaryotic initiation factor 4A-11 OS=Gossypium schwendimanii OX=34291 GN=Goshw_025250 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology