Basic Information
Locus ID:
nbisL1-mrna-4578
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 3050146 | 3052106 | - | nbisL1-mrna-4578 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 16,899.55 Da | 48.16 | 68.73 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 59 | 111 | 5.84576E-12 | - |
| Pfam | PF12906 | RING-variant domain | 59 | 110 | 8.5E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 56 | 113 | 4.06E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 121 | 2.8E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 58 | 111 | 2.0E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 51 | 117 | 18.194618 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_002312134.1 | uncharacterized protein LOC7487996 [Populus trichocarpa] | 0 |
| TrEMBL | A0A836IKE0 | Zinc finger family protein OS=Salix suchowensis OX=1278906 GN=IMY05_008G0050800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology