Basic Information
Locus ID:
nbisL1-mrna-4552
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 4556498 | 4565872 | + | nbisL1-mrna-4552 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 103,844.02 Da | 42.55 | 101.28 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 508 | 933 | 4.2E-35 | IPR005828 |
| Pfam | PF01408 | Oxidoreductase family, NAD-binding Rossmann fold | 5 | 117 | 1.7E-11 | IPR000683 |
| Pfam | PF02894 | Oxidoreductase family, C-terminal alpha/beta domain | 157 | 354 | 6.8E-13 | IPR004104 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 460 | 932 | 1.11E-62 | IPR036259 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 3 | 165 | 3.18E-20 | IPR036291 |
| SUPERFAMILY | SSF55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 143 | 271 | 2.45E-22 | - |
| Gene3D | G3DSA:3.40.50.720 | - | 6 | 315 | 1.9E-54 | - |
| Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 139 | 342 | 1.9E-54 | - |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 470 | 937 | 7.7E-79 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 476 | 929 | 37.026817 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 805 | 822 | - | IPR005829 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_020539794.1 | organic cation/carnitine transporter 7 isoform X2 [Jatropha curcas] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MJ65 | MFS domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology