Basic Information
Locus ID:
nbisL1-mrna-4548
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Peroxisome biogenesis protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 61718206 | 61719122 | - | nbisL1-mrna-4548 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 11,673.49 Da | 50.62 | 72.91 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16526 | RING-HC_PEX2 | 39 | 80 | 9.04831E-13 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 39 | 79 | 4.5E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 33 | 86 | 6.67E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 101 | 1.0E-7 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 39 | 80 | 9.346889 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 55 | 64 | - | IPR017907 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79810.2 | Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein. Dominant suppressor of det1 phenotypes. Encodes a peroxisomal protein essential for Arabidopsis growth. Inserted directly from the cytosol into peroxisomes. | 0 |
| RefSeq | XP_039045679.1 | peroxisome biogenesis protein 2-like [Hibiscus syriacus] | 0 |
| Q9CA86 | Peroxisome biogenesis protein 2 OS=Arabidopsis thaliana OX=3702 GN=PEX2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2XX13 | Peroxisome bioproteinsis protein 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00113124pilonHSYRG00608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13543, jg27217 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26119 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010886 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g221280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11371, Sbi_jg46323 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20652 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005325 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl13541, Sgl18727, Sgl55809, Sgl61016 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016281, gene:ENSEOMG00000037011 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0011620, CQ.Regalona.r1.9AG0013040 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30124180, pistato.v30124910 |
| Apiaceae | Apium graveolens | 1 | Ag5G00861 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G003880 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716346 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1906.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri8G08678, Ftri8G28883, FtriNA31509 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G79810.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018845m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g35950.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g051930.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0314 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0333 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g12020 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.1097s00003.v1.0, Dusal.1097s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g14570 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4548, nbisL1-mrna-8129 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.321 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041650 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37398, Lb2G15479 |
| Poaceae | Echinochloa crus-galli | 2 | AH05.3177, BH05.3203 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0400270, gene-QOZ80_5BG0448910 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0700750.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_032506, gene-QYE76_032515 |
| Poaceae | Oryza coarctata | 2 | Oco10G005600, Oco12G008010 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g19480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G159800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0106762, Pt_Chr0106838, Pt_Chr0601672 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G010620, Chr01G022950, Chr18G005070, Chr22G011950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G525800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG042430, gene_TRIDC7BG033570 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G303900.1, TraesCS7B02G204300.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb031430_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13257 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7763 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1651, evm.TU.LG22.538 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g22480 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.558 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27936 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16302 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7971 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.122 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018897 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7366 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21321 |
| Salicaceae | Populus euphratica | 3 | populus_peu02718, populus_peu33624, populus_peu33627 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132633377, gene-LOC132645914 |
| Solanaceae | Solanum chilense | 1 | SOLCI001217500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021053 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16759 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1985 |
| Zosteraceae | Zostera marina | 1 | Zosma04g03360.v3.1 |