Basic Information
Locus ID:
nbisL1-mrna-4529
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 61570618 | 61571949 | + | nbisL1-mrna-4529 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 44,648.35 Da | 44.47 | 77.01 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13964 | Kelch motif | 105 | 151 | 6.4E-7 | - |
| Pfam | PF01344 | Kelch motif | 165 | 200 | 1.9E-8 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 78 | 335 | 2.35E-42 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 50 | 2.09E-5 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 69 | 347 | 6.2E-41 | IPR015915 |
| SMART | SM00612 | kelc_smart | 116 | 165 | 0.42 | IPR006652 |
| SMART | SM00612 | kelc_smart | 167 | 214 | 1.0E-6 | IPR006652 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 364 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80440.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_039026112.1 | F-box/kelch-repeat protein At1g80440-like [Hibiscus syriacus] | 0 |
| Q9M8L2 | F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana OX=3702 GN=At1g80440 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A2YNB9 | Putative Galactose oxidase/kelch repeat superfamily protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111366pilonHSYRG00090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology