Basic Information
Locus ID:
nbisL1-mrna-4491
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 5107547 | 5116356 | - | nbisL1-mrna-4491 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 95,033.03 Da | 57.49 | 76.14 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 6 | 105 | 1.74941E-11 | - |
| CDD | cd00159 | RhoGAP | 166 | 305 | 1.53959E-31 | - |
| Pfam | PF00169 | PH domain | 6 | 109 | 3.4E-12 | IPR001849 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 600 | 679 | 1.9E-21 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 166 | 310 | 2.1E-31 | IPR000198 |
| SUPERFAMILY | SSF50729 | PH domain-like | 3 | 108 | 1.04E-17 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 166 | 355 | 1.41E-34 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 1 | 111 | 3.8E-16 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 134 | 355 | 9.3E-42 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 163 | 350 | 2.2E-26 | IPR000198 |
| SMART | SM00233 | PH_update | 4 | 112 | 3.0E-15 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 3 | 110 | 15.231 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 157 | 353 | 29.852507 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 413 | - | - |
| Coils | Coil | Coil | 193 | 213 | - | - |
| Coils | Coil | Coil | 589 | 623 | - | - |
| Coils | Coil | Coil | 648 | 682 | - | - |
| Coils | Coil | Coil | 809 | 836 | - | - |
| Coils | Coil | Coil | 564 | 584 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_021643720.1 | rho GTPase-activating protein 7-like isoform X1 [Hevea brasiliensis] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067LGF7 | Rho GTPase-activating protein 7-like OS=Jatropha curcas OX=180498 GN=JCGZ_22776 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology