Basic Information
Locus ID:
nbisL1-mrna-4453
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001562F_pilon | 5216176 | 5222461 | + | nbisL1-mrna-4453 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 34,760.56 Da | 50.07 | 85.75 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 28 | 69 | 3.1E-5 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 122 | 166 | 2.3E-12 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 169 | 212 | 5.3E-10 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 78 | 301 | 3.01E-43 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 28 | 100 | 1.57E-6 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 102 | 302 | 3.7E-31 | IPR015915 |
| SMART | SM00612 | kelc_smart | 133 | 179 | 4.8E-5 | IPR006652 |
| SMART | SM00612 | kelc_smart | 180 | 233 | 2.6 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21950.1 | SKP1 interacting partner 6. Encodes an SKP1 interacting partner (SKIP6). | 0 |
| RefSeq | XP_012075229.1 | F-box/kelch-repeat protein SKIP6 [Jatropha curcas] | 0 |
| Q9SJ04 | F-box/kelch-repeat protein SKIP6 OS=Arabidopsis thaliana OX=3702 GN=SKIP6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JVN3 | F-box domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39461 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8223 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026775 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g139290 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12836, Sbi_jg53052 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8816 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33328, Sgl38493, Sgl39613 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000205, gene:ENSEOMG00000005629 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0019390, CQ.Regalona.r1.6BG0020430 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30043630, pistato.v30043670 |
| Apiaceae | Apium graveolens | 3 | Ag3G01261, Ag5G00013, Ag7G02266 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G007410 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700899 |
| Asteraceae | Flaveria trinervia | 2 | Ftri6G10037, FtriNA23893 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G21950.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000172m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g01030.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g022190.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1813 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1880 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g10120 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08350 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1976 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014431 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19785 |
| Poaceae | Echinochloa crus-galli | 2 | BH03.4370, CH07.145 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0581510, gene-QOZ80_7BG0612580 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0113310.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_038817 |
| Poaceae | Oryza coarctata | 1 | Oco14G016400 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g47650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G387100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305545 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G000480, Chr27G017100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G240200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG013390, gene_TRIDC2BG016300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G111200.1.cds1, TraesCS2B02G130200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb111340_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5768 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG07.297 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g23820 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1627 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17552 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9219 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12152 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.980 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007333 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22863 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4453 |
| Salicaceae | Populus euphratica | 1 | populus_peu23020 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614493 |
| Solanaceae | Solanum chilense | 1 | SOLCI001732700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017893 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_341 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1027 |
| Zosteraceae | Zostera marina | 1 | Zosma01g29830.v3.1 |