Basic Information
Locus ID:
nbisL1-mrna-4448
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 2189570 | 2192425 | + | nbisL1-mrna-4448 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.80 | 27,316.28 Da | 59.56 | 85.98 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 61 | 139 | 1.97E-12 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 47 | 106 | 3.1E-7 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 107 | 242 | 2.9E-5 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 244 | 10.633728 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29720.1 | Leucine-rich repeat transmembrane protein kinase. | 0 |
| RefSeq | XP_034928925.1 | putative serine/threonine-protein kinase [Populus alba] | 0 |
| P85193 | Putative serine/threonine-protein kinase (Fragment) OS=Helianthus annuus OX=4232 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1YYE9 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G221400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0004010, CQ.Regalona.r1.8BG0004180 |
| Apiaceae | Apium graveolens | 2 | Ag10G01027, Ag4G01609 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-31074, nbis-gene-47989 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30175 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.124 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-21773, nbisL1-mrna-21792, nbisL1-mrna-26110 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4668 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4448 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19434 |
| Salicaceae | Populus euphratica | 2 | populus_peu17329, populus_peu37223 |