Basic Information
Locus ID:
nbisL1-mrna-4439
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 60881506 | 60885522 | + | nbisL1-mrna-4439 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 71,863.35 Da | 33.62 | 86.72 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 46 | 131 | 4.3E-12 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 165 | 245 | 3.8E-12 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 327 | 529 | 6.0E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 310 | 619 | 1.48E-76 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 141 | 248 | 1.0E-15 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 402 | 603 | 4.2E-57 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 35 | 133 | 2.5E-14 | IPR038408 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 286 | 401 | 6.0E-31 | - |
| SMART | SM00220 | serkin_6 | 326 | 610 | 1.1E-28 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 142 | 248 | 15.683213 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 326 | 610 | 35.707443 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 35 | 134 | 13.492605 | IPR002902 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 448 | 460 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40380.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 42. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_039026002.1 | cysteine-rich receptor-like protein kinase 42 [Hibiscus syriacus] | 0 |
| Q9FNE1 | Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana OX=3702 GN=CRK42 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A2YNJ9 | Cysteine-rich receptor-like protein kinase 42 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111366pilonHSYRG00310 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology