Basic Information
Locus ID:
nbisL1-mrna-4415
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 1922812 | 1925659 | - | nbisL1-mrna-4415 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 68,300.77 Da | 40.20 | 104.48 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 251 | 293 | 8.85374E-29 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 374 | 413 | 7.2E-11 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 457 | 495 | 1.8E-6 | IPR000225 |
| Pfam | PF04564 | U-box domain | 247 | 317 | 2.0E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 342 | 618 | 9.0E-49 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 247 | 322 | 1.51E-30 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 244 | 318 | 1.0E-30 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 8 | 120 | 4.6E-10 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 319 | 456 | 1.3E-28 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 457 | 622 | 2.3E-25 | IPR011989 |
| SMART | SM00185 | arm_5 | 374 | 414 | 1.2E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 456 | 496 | 0.046 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 250 | 313 | 6.3E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 497 | 537 | 11.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 415 | 455 | 0.062 | IPR000225 |
| SMART | SM00185 | arm_5 | 538 | 578 | 380.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 426 | 468 | 8.837399 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 385 | 427 | 13.9474 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 246 | 320 | 43.938358 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_034928996.1 | U-box domain-containing protein 14-like [Populus alba] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JW42 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology