Basic Information
Locus ID:
nbisL1-mrna-4412
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 17333373 | 17342758 | - | nbisL1-mrna-4412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 95,928.80 Da | 40.02 | 77.46 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 755 | 816 | 0.00713218 | - |
| CDD | cd15567 | PHD4_NSD | 531 | 570 | 3.12867E-15 | - |
| Pfam | PF16135 | Tify domain binding domain | 261 | 315 | 5.1E-13 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 464 | 513 | 5.8E-16 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 517 | 571 | 2.06E-13 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 595 | 652 | 4.08E-6 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 754 | 840 | 1.12E-8 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 594 | 656 | 1.8E-9 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 523 | 574 | 4.4E-16 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 700 | 866 | 5.6E-7 | - |
| SMART | SM00249 | PHD_3 | 530 | 571 | 2.2E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 597 | 654 | 0.004 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 528 | 573 | 10.1842 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 702 | 854 | 9.374807 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 595 | 656 | 8.680099 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 531 | 570 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 77 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_037496987.1 | uncharacterized protein LOC105636265 [Jatropha curcas] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067KHI8 | PHD-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_09035 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology