Basic Information
Locus ID:
nbisL1-mrna-441
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 3541344 | 3552148 | + | nbisL1-mrna-441 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 130,420.92 Da | 42.13 | 79.88 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 55 | 178 | 1.04196E-39 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 196 | 524 | 9.8673E-164 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 885 | 1094 | 4.2E-53 | IPR029346 |
| Pfam | PF00917 | MATH domain | 60 | 179 | 3.9E-20 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 623 | 875 | 4.1E-76 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 198 | 519 | 4.0E-47 | IPR001394 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 51 | 182 | 1.96E-39 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 193 | 550 | 3.92E-97 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 801 | 898 | 3.7E-25 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 195 | 523 | 4.2E-89 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 52 | 194 | 1.3E-49 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 683 | 800 | 1.5E-44 | - |
| SMART | SM00061 | math_3 | 55 | 159 | 8.9E-23 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 53 | 178 | 37.343521 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 198 | 522 | 40.260628 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 199 | 214 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 438 | 455 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 506 | - | - |
| Coils | Coil | Coil | 531 | 562 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_012443165.1 | ubiquitin C-terminal hydrolase 13 isoform X1 [Gossypium raimondii] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D2TLR0 | ubiquitinyl hydrolase 1 OS=Gossypium raimondii OX=29730 GN=B456_009G081400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology