Basic Information
Locus ID:
nbisL1-mrna-4403
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 5950777 | 5955710 | + | nbisL1-mrna-4403 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 72,122.63 Da | 42.79 | 93.91 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 261 | 303 | 5.46705E-28 | - |
| Pfam | PF04564 | U-box domain | 257 | 327 | 3.5E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 384 | 423 | 9.2E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 468 | 505 | 1.7E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 549 | 588 | 2.1E-4 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 256 | 333 | 7.57E-32 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 355 | 637 | 5.76E-50 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 348 | 532 | 5.3E-39 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 10 | 117 | 3.0E-9 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 534 | 651 | 9.2E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 257 | 330 | 2.5E-31 | IPR013083 |
| SMART | SM00185 | arm_5 | 384 | 424 | 2.3E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 425 | 465 | 3.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 466 | 506 | 1.5 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 260 | 323 | 6.6E-36 | IPR003613 |
| SMART | SM00185 | arm_5 | 590 | 630 | 220.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 507 | 547 | 26.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 548 | 588 | 23.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 395 | 437 | 11.9524 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 256 | 330 | 46.335541 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 518 | 560 | 9.2224 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 665 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 631 | 665 | - | - |
| Coils | Coil | Coil | 621 | 641 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_012065019.1 | U-box domain-containing protein 13 [Jatropha curcas] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LYH9 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology