Basic Information
Locus ID:
nbisL1-mrna-4388
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 1702153 | 1707648 | - | nbisL1-mrna-4388 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 96,098.25 Da | 66.99 | 61.86 | -1.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 784 | 824 | 1.768E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 782 | 829 | 7.6E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 784 | 830 | 6.28E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 772 | 835 | 1.3E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 785 | 824 | 10.748424 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 669 | - | - |
| Coils | Coil | Coil | 714 | 734 | - | - |
| Coils | Coil | Coil | 431 | 451 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021659180.1 | uncharacterized protein LOC110649078 isoform X1 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A251KI60 | RING-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_07G093800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology