Basic Information
Locus ID:
nbisL1-mrna-4385
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Glutelin type-A
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 6092579 | 6094056 | + | nbisL1-mrna-4385 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 38,527.84 Da | 26.38 | 88.93 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 3 | 172 | 4.22038E-69 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 199 | 353 | 6.18891E-74 | - |
| Pfam | PF00190 | Cupin | 196 | 337 | 3.4E-21 | IPR006045 |
| Pfam | PF00190 | Cupin | 10 | 157 | 7.4E-30 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 16 | 345 | 3.67E-49 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 4 | 195 | 4.7E-36 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 196 | 356 | 2.2E-49 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 3 | 157 | 4.4E-34 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 197 | 339 | 9.8E-16 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 294 | 312 | 1.1E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 211 | 231 | 1.1E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 276 | 291 | 1.1E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 316 | 333 | 1.1E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 258 | 274 | 1.1E-13 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07750.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_002531106.1 | glutelin type-D 1 [Ricinus communis] | 0 |
| Q9ZWA9 | 12S seed storage protein CRD OS=Arabidopsis thaliana OX=3702 GN=CRD PE=1 SV=1 | 0 | |
| TrEMBL | B9SYN7 | Nutrient reservoir, putative OS=Ricinus communis OX=3988 GN=RCOM_0787760 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology