Basic Information
Locus ID:
nbisL1-mrna-4378
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001562F_pilon | 4706341 | 4713084 | + | nbisL1-mrna-4378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 44,773.03 Da | 54.94 | 70.53 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 263 | 327 | 2.12738E-22 | - |
| CDD | cd16872 | ARID_HMGB9-like | 37 | 122 | 6.1627E-52 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 39 | 122 | 4.5E-19 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 263 | 330 | 4.6E-17 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 251 | 336 | 6.28E-23 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 32 | 134 | 1.7E-30 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 245 | 341 | 8.7E-23 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 27 | 133 | 3.7E-29 | IPR036431 |
| SMART | SM00398 | hmgende2 | 262 | 331 | 1.9E-21 | IPR009071 |
| SMART | SM00501 | bright_3 | 36 | 127 | 3.9E-31 | IPR001606 |
| SMART | SM01014 | ARID_2 | 32 | 122 | 6.5E-30 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 263 | 330 | 16.633762 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 35 | 126 | 26.769611 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 371 | - | - |
| Coils | Coil | Coil | 312 | 332 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_012071138.1 | high mobility group B protein 15 [Jatropha curcas] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JIC1 | High mobility group B protein 15 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology