Basic Information
Locus ID:
nbisL1-mrna-4377
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 60370572 | 60372668 | + | nbisL1-mrna-4377 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 39,148.73 Da | 40.87 | 67.14 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 65 | 352 | 7.7E-88 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 239 | 342 | 1.37E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 238 | 355 | 7.1E-44 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 241 | 343 | 27.71139 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 190 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65670.2 | indole-3-acetic acid inducible 9. auxin (indole-3-acetic acid) induced gene | 0 |
| RefSeq | XP_039009360.1 | auxin-responsive protein IAA9-like [Hibiscus syriacus] | 0 |
| Q38827 | Auxin-responsive protein IAA9 OS=Arabidopsis thaliana OX=3702 GN=IAA9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3A6S9 | Auxin-responsive protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110562pilonHSYRG00039 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology