Basic Information
Locus ID:
nbisL1-mrna-4359
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 16979732 | 16988208 | - | nbisL1-mrna-4359 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 174,316.52 Da | 47.79 | 93.45 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1176 | 1561 | 1.82917E-102 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1223 | 1563 | 7.4E-72 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1170 | 1556 | 9.16E-87 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 121 | 542 | 2.63E-32 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 117 | 546 | 5.5E-44 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1456 | 1561 | 1.3E-30 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1119 | 1347 | 4.3E-38 | - |
| SMART | SM00119 | hect_3 | 1188 | 1563 | 8.3E-85 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1190 | 1563 | 54.196247 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 75 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_021666883.1 | E3 ubiquitin-protein ligase UPL4-like [Hevea brasiliensis] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2M413 | HECT-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology