Basic Information
Locus ID:
nbisL1-mrna-4356
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 16965959 | 16968559 | - | nbisL1-mrna-4356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 93,480.99 Da | 47.61 | 73.41 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 215 | 297 | 2.21184E-24 | - |
| Pfam | PF00855 | PWWP domain | 211 | 298 | 1.8E-16 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 208 | 332 | 7.82E-25 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 199 | 304 | 4.6E-24 | - |
| SMART | SM00293 | PWWP_4 | 211 | 272 | 1.5E-7 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 213 | 262 | 13.952513 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 574 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 711 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 721 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 842 | 866 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 524 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_021638436.1 | uncharacterized protein LOC110633905 isoform X1 [Hevea brasiliensis] | 0 |
| Q9LYZ0 | PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JKQ6 | Uncharacterized protein MANES_08G003300 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology