Basic Information
Locus ID:
nbisL1-mrna-4339
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000139F_pilon | 1238468 | 1260698 | - | nbisL1-mrna-4339 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 150,591.33 Da | 46.75 | 74.99 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 185 | 280 | 1.11938E-43 | - |
| CDD | cd13999 | STKc_MAP3K-like | 985 | 1236 | 3.83646E-82 | - |
| Pfam | PF00564 | PB1 domain | 198 | 281 | 2.3E-19 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 981 | 1184 | 6.1E-34 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 971 | 1244 | 1.07E-57 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 197 | 287 | 2.55E-21 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1066 | 1187 | 9.4E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 200 | 282 | 7.3E-12 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1188 | 1281 | 1.7E-9 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 972 | 1065 | 3.3E-26 | - |
| SMART | SM00220 | serkin_6 | 979 | 1242 | 4.3E-31 | IPR000719 |
| SMART | SM00666 | PB1_new | 196 | 282 | 4.2E-31 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 979 | 1242 | 29.643957 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1104 | 1116 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 985 | 1010 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1061 | 1074 | 9.1E-10 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1098 | 1116 | 9.1E-10 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1207 | 1229 | 9.1E-10 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 437 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35050.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_011018312.1 | PREDICTED: uncharacterized protein LOC105121394 [Populus euphratica] | 0 |
| O64768 | RAF-like serine/threonine-protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=RAF24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M006 | Uncharacterized protein LOC105121394 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology