Basic Information
Locus ID:
nbisL1-mrna-4329
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 16766861 | 16769219 | - | nbisL1-mrna-4329 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 54,780.38 Da | 39.69 | 92.46 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 329 | 355 | 4.4E-8 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 41 | 130 | 5.2E-8 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 228 | 328 | 5.3E-24 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 36 | 131 | 1.65E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 33 | 151 | 7.5E-11 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 44 | 114 | 11.584966 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 228 | 328 | 16.396564 | IPR027356 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 329 | 379 | 18.497925 | IPR027356 |
| Coils | Coil | Coil | 426 | 453 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_002322881.4 | BTB/POZ domain-containing protein At5g03250 [Populus trichocarpa] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2WYG7 | Phototropic-responsive NPH3 family protein OS=Populus deltoides OX=3696 GN=H0E87_026851 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology