Basic Information
Locus ID:
nbisL1-mrna-4297
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
membrane protein At1g06890-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 6987830 | 6994461 | + | nbisL1-mrna-4297 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.50 | 61,578.56 Da | 39.82 | 106.65 | 0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03151 | Triose-phosphate Transporter family | 234 | 507 | 8.3E-19 | IPR004853 |
| SUPERFAMILY | SSF103481 | Multidrug resistance efflux transporter EmrE | 424 | 507 | 1.19E-5 | - |
| SUPERFAMILY | SSF50685 | Barwin-like endoglucanases | 4 | 86 | 1.5E-23 | IPR036908 |
| SUPERFAMILY | SSF103481 | Multidrug resistance efflux transporter EmrE | 261 | 357 | 1.16E-5 | - |
| Gene3D | G3DSA:2.40.40.10 | - | 1 | 79 | 7.8E-8 | IPR036908 |
| SMART | SM00837 | dpbb_1 | 1 | 58 | 3.7E-12 | IPR007112 |
| ProSiteProfiles | PS50842 | Expansin, family-45 endoglucanase-like domain profile. | 1 | 68 | 13.119228 | IPR007112 |
| PRINTS | PR01226 | Expansin signature | 79 | 100 | 2.8E-30 | IPR002963 |
| PRINTS | PR01226 | Expansin signature | 43 | 56 | 2.8E-30 | IPR002963 |
| PRINTS | PR01226 | Expansin signature | 67 | 79 | 2.8E-30 | IPR002963 |
| PRINTS | PR01226 | Expansin signature | 26 | 43 | 2.8E-30 | IPR002963 |
| PRINTS | PR01226 | Expansin signature | 7 | 17 | 2.8E-30 | IPR002963 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 561 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G06890.1 | nodulin MtN21 /EamA-like transporter family protein. | 0 |
| RefSeq | XP_012078221.1 | UDP-xylose transporter 3 [Jatropha curcas] | 0 |
| Q8RXL8 | UDP-xylose transporter 3 OS=Arabidopsis thaliana OX=3702 GN=UXT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M3R8 | TPT domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology