Basic Information
Locus ID:
nbisL1-mrna-4273
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 16347939 | 16356966 | - | nbisL1-mrna-4273 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 99,828.30 Da | 44.28 | 84.66 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 536 | 575 | 6.47482E-18 | - |
| Pfam | PF16135 | Tify domain binding domain | 226 | 281 | 3.8E-13 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 536 | 577 | 9.5E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 469 | 519 | 3.2E-16 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 523 | 577 | 5.76E-16 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 618 | 681 | 4.43E-8 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 778 | 865 | 4.55E-5 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 620 | 682 | 7.5E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 522 | 611 | 3.8E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 535 | 576 | 1.7E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 623 | 680 | 9.5E-4 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 533 | 578 | 10.2465 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 536 | 575 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 416 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021657820.1 | uncharacterized protein LOC110648013 isoform X3 [Hevea brasiliensis] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MRG7 | PHD-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology