halophFGD

Basic Information

Locus ID: nbisL1-mrna-4253

Species & Taxonomic ID: Hibiscus hamabo Siebold & Zucc. & 1841

Genome Assembly:

Short Name: CR4

Description: Serine threonine-protein kinase-like protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	59239256	59240515	-	nbisL1-mrna-4253

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.32	18,625.97 Da	57.24	61.86	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	113	160	3.56E-11	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	72	172	8.4E-13	-
ProSiteProfiles	PS50050	TNFR/NGFR family cysteine-rich region domain profile.	32	80	9.573201	IPR001368

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K04730 (interleukin-1 receptor-associated kinase 1 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G59420.1	crinkly4. Encodes a membrane localized protein with similarity to receptor kinases which is involved in epidermal cell differentiation. Flowers of mutants have disorganized ovule integument growth and abnormal sepal margins. In the roots, mutants initiate more lateral roots but fewer laterals actually emerge due to defects in lateral root formation. Mutants also display disorganized columella. The root phenotypes can be traced to abnormalities in asymmetric divisions in the pericycle and root apex. Conflicting data regarding the role of the kinase domain- which may or may not be required for function. Complementation studies indicate that the C-terminal domain is also not required for signaling function. May be regulated by protein turnover which is mediated by endocytic processes.
RefSeq	XP_039054707.1	serine/threonine-protein kinase-like protein ACR4 [Hibiscus syriacus]
Swiss-Prot	Q9LX29	Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana OX=3702 GN=ACR4 PE=1 SV=1
TrEMBL	A0A6A6NCM4	TNFR-Cys domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_006994 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

No orthogroup found for nbisL1-mrna-4253.