Basic Information
Locus ID:
nbisL1-mrna-4235
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
MATH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001562F_pilon | 3885708 | 3895985 | - | nbisL1-mrna-4235 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 130,882.57 Da | 55.11 | 70.99 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 70 | 170 | 4.94748E-27 | IPR002083 |
| Pfam | PF00917 | MATH domain | 76 | 126 | 3.0E-6 | IPR002083 |
| Pfam | PF00917 | MATH domain | 130 | 171 | 8.7E-4 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 70 | 174 | 7.19E-26 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 129 | 178 | 1.5E-8 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 53 | 128 | 1.0E-15 | IPR008974 |
| SMART | SM00061 | math_3 | 71 | 152 | 0.0012 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 69 | 169 | 18.984619 | IPR002083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 643 | 664 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 57 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04300.1 | TRAF-like superfamily protein. | 0 |
| RefSeq | XP_024462169.2 | TNF receptor-associated factor homolog 1b isoform X1 [Populus trichocarpa] | 0 |
| A8MQL1 | TNF receptor-associated factor homolog 1b OS=Arabidopsis thaliana OX=3702 GN=TRAF1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MIX0 | MATH domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg11112, jg11114, jg11115, jg11117, jg5785 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15989 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah018167, Ah018168 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g056680, BVRB_3g056690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15221, Sbi_jg56036 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26516 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00020194, GOSA_00028970 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02233, Sgl07385 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014520, gene:ENSEOMG00000031572 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0009250, CQ.Regalona.r1.3BG0009260 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235370 |
| Apiaceae | Apium graveolens | 3 | Ag1G01796, Ag2G01752, Ag9G01723 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G012890, scaffold002855G000040 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103698654, gene-LOC103710177, gene-LOC120105140 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_06.1959.V1.1, AsparagusV1_08.873.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G22685, Ftri14G26879, Ftri14G33902, Ftri7G03194 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G04300.3, AT4G16045.1, AT5G43560.1, AT5G52330.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10003141m.g.v1.0, Thhalv10006644m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g03110.v2.2, Sp1g28310.v2.2, Sp2g08380.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g001650.2N, BniB03g000800.2N, BniB03g035720.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0417 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0426 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g01790, gene.Cymno01g01800, gene.Cymno06g12370 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0359s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g11140 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4192, nbisL1-mrna-5008 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.867 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022802, Pov_00025885 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G11578, Lb5G27931, Lb7G34623 |
| Poaceae | Echinochloa crus-galli | 9 | AH02.3449, AH05.1809, AH05.3941, BH02.3514, BH05.1975 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0035330, gene-QOZ80_1BG0085390 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0078900.1, HORVU.MOREX.r3.3HG0292700.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000620, gene-QYE76_014820 |
| Poaceae | Oryza coarctata | 6 | Oco01G021660, Oco02G022260, Oco09G013710, Oco10G013790 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g56800.1, LOC_Os05g43280.1, LOC_Os12g40520.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G293900, gene-BS78_08G131100 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0504255, Pt_Chr0504307, Pt_Chr0601565, Pt_Chr0601594 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G017330, Chr02G008210, Chr03G017370, Chr04G018420 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G531300, Tel3E01G506200, Tel5E01G129800 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG048410, gene_TRIDC1BG055060 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G325900.1, TraesCS1B02G339200.1 ... |
| Poaceae | Zea mays | 10 | Zm00001eb030930_P001, Zm00001eb030950_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-11774, nbis-gene-14379, nbis-gene-31227 ... |
| Poaceae | Zoysia macrostachya | 7 | Zma_g11262, Zma_g25278, Zma_g25279, Zma_g25280, Zma_g26903 ... |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.1301, evm.TU.LG11.1474, evm.TU.LG14.599 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g03410 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1243, evm.TU.Scaffold_6_RagTag.830 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1569, nbisL1-mrna-15849 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13200, nbisL1-mrna-17352 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2504, nbisL1-mrna-708 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.516, evm.TU.utg000019l.488 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00001747, Maker00001875, Maker00008388 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15247, nbisL1-mrna-6221 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1945, nbisL1-mrna-4235 |
| Salicaceae | Populus euphratica | 2 | populus_peu07485, populus_peu21506 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132610626, gene-LOC132617755, gene-LOC132642726 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI002175000, SOLCI002175100, SOLCI004834300 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107014504, gene-LOC107021306, gene-LOC107023308 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14894_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1206 |
| Zosteraceae | Zostera marina | 2 | Zosma06g23740.v3.1, Zosma06g24000.v3.1 |