Basic Information
Locus ID:
nbisL1-mrna-4220
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 58904816 | 58908294 | - | nbisL1-mrna-4220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 50,989.16 Da | 49.52 | 75.42 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 37 | 122 | 9.39453E-50 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 268 | 332 | 5.38041E-21 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 268 | 335 | 5.4E-15 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 39 | 122 | 2.8E-18 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 260 | 339 | 1.7E-21 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 33 | 135 | 2.09E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 251 | 345 | 7.0E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 29 | 130 | 1.1E-26 | IPR036431 |
| SMART | SM01014 | ARID_2 | 32 | 122 | 3.4E-29 | - |
| SMART | SM00398 | hmgende2 | 267 | 336 | 1.3E-19 | IPR009071 |
| SMART | SM00501 | bright_3 | 36 | 127 | 9.7E-30 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 268 | 335 | 15.048745 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 35 | 126 | 26.012711 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 275 | - | - |
| Coils | Coil | Coil | 317 | 337 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_012457353.1 | high mobility group B protein 15 [Gossypium raimondii] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J9K3S3 | High mobility group B protein 15-like OS=Gossypium armourianum OX=34283 GN=Goarm_003559 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology