Basic Information
Locus ID:
nbisL1-mrna-4217
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 58883162 | 58884202 | - | nbisL1-mrna-4217 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 39,031.19 Da | 53.06 | 85.43 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 205 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 296 | 0.018 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 55 | 303 | 4.16E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 17 | 345 | 8.6E-39 | IPR015943 |
| SMART | SM00320 | WD40_4 | 119 | 164 | 4.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 167 | 205 | 2.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 296 | 2.5E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 263 | 305 | 11.310488 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 263 | 299 | 9.282875 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 283 | 297 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | NP_001313775.1 | WD repeat-containing protein LWD1-like [Gossypium hirsutum] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | Q8L4X6 | WD-repeat protein GhTTG2 OS=Gossypium hirsutum OX=3635 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology