Basic Information
Locus ID:
nbisL1-mrna-4170
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
proteinaceous RNase P
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 8355960 | 8359815 | - | nbisL1-mrna-4170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 62,928.43 Da | 43.75 | 82.43 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 8 | 212 | 6.0E-82 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 255 | 482 | 5.2E-60 | IPR031595 |
| Gene3D | G3DSA:3.40.50.11980 | - | 272 | 448 | 7.8E-220 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 16 | 483 | 7.8E-220 | IPR011990 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 511 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 511 | 556 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16650.1 | proteinaceous RNase P 2. | 0 |
| RefSeq | XP_021652771.1 | proteinaceous RNase P 2-like [Hevea brasiliensis] | 0 |
| Q680B9 | Proteinaceous RNase P 2 OS=Arabidopsis thaliana OX=3702 GN=PRORP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YZB6 | ribonuclease P OS=Populus deltoides OX=3696 GN=H0E87_008088 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology