Basic Information
Locus ID:
nbisL1-mrna-4159
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 58207830 | 58219687 | - | nbisL1-mrna-4159 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 31,325.60 Da | 49.70 | 53.94 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 155 | 197 | 3.0E-5 | IPR018957 |
| Pfam | PF14599 | Zinc-ribbon | 202 | 258 | 1.4E-22 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 21 | 101 | 1.5E-20 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 152 | 204 | 4.82E-10 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 92 | 149 | 8.76E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 18 | 90 | 4.18E-18 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 218 | 4.5E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 227 | 264 | 5.6E-16 | - |
| SMART | SM00184 | ring_2 | 155 | 197 | 2.6E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 155 | 198 | 11.309038 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 91 | 155 | 31.582655 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 14 | 89 | 24.190212 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_039023126.1 | E3 ubiquitin-protein ligase MIEL1-like [Hibiscus syriacus] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2YVG6 | Lipase-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111206pilonHSYRG00071 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology