Basic Information
Locus ID:
nbisL1-mrna-4157
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000014F_pilon | 5992606 | 5993627 | + | nbisL1-mrna-4157 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 35,128.07 Da | 42.89 | 75.65 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 94 | 136 | 1.3E-5 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 139 | 183 | 3.6E-9 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 63 | 241 | 7.98E-35 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 23 | 261 | 2.0E-34 | IPR015915 |
| SMART | SM00612 | kelc_smart | 101 | 149 | 0.0011 | IPR006652 |
| SMART | SM00612 | kelc_smart | 150 | 197 | 0.0012 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44130.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_011047101.1 | PREDICTED: F-box/kelch-repeat protein At1g15670-like [Populus euphratica] | 0 |
| O80582 | F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana OX=3702 GN=At2g44130 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2L2B4 | F-box/kelch-repeat protein At1g15670-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology