Basic Information
Locus ID:
nbisL1-mrna-4148
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 8761201 | 8764536 | + | nbisL1-mrna-4148 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 62,795.35 Da | 40.16 | 93.34 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 316 | 449 | 9.71029E-20 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 318 | 448 | 4.1E-34 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 277 | 495 | 1.64E-46 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 450 | 534 | 2.5E-81 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 278 | 536 | 2.5E-81 | IPR027417 |
| SMART | SM00382 | AAA_5 | 314 | 451 | 2.3E-15 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 421 | 439 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 515 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_021671422.1 | nuclear valosin-containing protein-like [Hevea brasiliensis] | 0 |
| Q9UBP0 | Spastin OS=Homo sapiens OX=9606 GN=SPAST PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A6MEK9 | F-box domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_028545 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology